Scaffold Ga0334989_0188611

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0188611
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1136
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003847	Metagenome / Metatranscriptome	465	Y
F007402	Metagenome / Metatranscriptome	352	Y
F056331	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0188611_261_479	F056331	N/A	MRSECVSCVPRMFLHASVVCVACGTELLDVLGIKIRVAMLVRESTYLRSSHGTRKRSASKYLPRTRVRDTHY
Ga0334989_0188611_614_781	F007402	N/A	MVLPHHVSKFLPKTKVFFPHDFTLIASVVGESVIGHGIIRKDIPIMARLTGQTLE
Ga0334989_0188611_919_1134	F003847	N/A	NKKRIDYDYKVGDKVLIRKDGILRKAESIWKKEPWTITTVHTNGTIRIQCGTKSERINIRRVTPFSEELLI