Scaffold Ga0334989_0172663

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0172663
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1196
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024717	Metagenome	204	Y
F048156	Metagenome / Metatranscriptome	148	N
F102623	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0172663_2_493	F048156	N/A	MNLLKTIIERLNQRVEVANIFDKQFGLCELNANGNDKAWVHYIGNGQAEVVTNFDAKQGTLFWAKRGKVTVNKTDAYKMSGCKQLYVTSFPLTAYAVVRKSHLPCDGDDAQDWLASRIYKLTSGTDPLFKQNLGVINYEVIPSGYINEIKTLTANYEWACVTVD
Ga0334989_0172663_490_951	F024717	N/A	MATPKEISGRIDGLFAEWSGGFTPLYFAVLDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTPAYAKIKAKNGRPPLELTGFLKRSFATDQTTVVTQGFDTAIYTVADEAGKVAGLEKLYGTIFKPTAEEQAAMLQLHADLLVEQISNQISKP
Ga0334989_0172663_951_1196	F102623	N/A	EIYNYGLSISPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP