NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0067616

Scaffold Ga0334989_0067616


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0067616 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1973
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034470Metagenome174Y
F042169Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0067616_1146_1367F042169GGAMPLDATIGRVFTPYRPGGRLGHRFWHKNRVVALWKPLFEASVKKARNKPSTQRIEATSCVERWNATIKAKELT
Ga0334989_0067616_588_740F034470GGGGGMLVHQNHVAGAGRGNGSIMVGMFVSLCLASKKPSKREFFIPAGTDLAAKL
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