Scaffold Ga0334989_0041376

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0041376
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037584	Metagenome / Metatranscriptome	167	Y
F042169	Metagenome	158	Y
F093286	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0041376_1091_1201	F037584	GGCGG	MNAVLAIIADGGRAIVVIYTEGVEINLFLIYFIILY
Ga0334989_0041376_1973_2098	F037584	N/A	MNAVLAIIADSGRAIVVIYTEGEEINYFILYFIDSSKGIGF
Ga0334989_0041376_2237_2479	F093286	AGCAG	MSFFGDDHGGEAVVGRRDAYWASGGSAVTNSLLLSAVWVVGAVFADRNAPALGGILNQQGVGNSTRSWPAFLPPSHIPHL
Ga0334989_0041376_624_851	F042169	AGG	MPLDTAIGRVFALYRPIGRHGHRFWSKKSSCGVVKLLIKASVKKTQNGPSTQLIEATTTSCDERLNITIKAEERS