NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0035426

Scaffold Ga0334989_0035426


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0035426 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2707
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017607Metagenome / Metatranscriptome239Y
F021250Metagenome219N
F054611Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0035426_1066_1959F021250N/AMIVEENLEGWNNIPVKSKEVIYPQSKDNKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKNFIHCKDIDELDDDELKLLYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMSVPKTIRLNANLLALFKFADSDTVLEDVYPLFSAFIKEHEFKELYEYSTQEPFNALVIDATRGKPIFKKNFDKVLHIS
Ga0334989_0035426_178_504F017607N/AMNIDSVYFKKKDIVNSREAFNELEKIRLKAKPTKKDLILDPSNIPPDMMNTIRNNNAFEDEFWRTHNKYKLTPHIDSKPKYTPPYYAPHETGYGSFNYESYVQNLKRI
Ga0334989_0035426_2009_2212F054611N/AMVDIDEEKLQNLMELVIKEHPDLDTYVVWIICANYLLNEQGIYGDEKLAEQIREQRNKESGYNIRVV
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