Scaffold Ga0334989_0026236

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0026236
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3116
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009958	Metagenome / Metatranscriptome	310	Y
F096653	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0026236_2_214	F096653	N/A	MELDLLSSRINLNHTCLKLEISLYEIKTKHPKRTDLITSMQSSLKDIRRAMVVYEVLEKEFRVARQTNFNL
Ga0334989_0026236_2405_2689	F006463	N/A	MTSGTIYDQLDWWQRQWRGSFDLGLYLEICRIKKNEQTKYKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIILEIKQIEK
Ga0334989_0026236_2686_3018	F009958	N/A	MKNRNLEFWNKGWELTYEFLGWTYSIAGTWEFNDYDEVSEFAFIELDVDVSEKWLTETDDHLQPHVLGVRILEDLRLEMQEAINSDLANYNFWEWKASNDESNYNFYHEL