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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033984 Open in IMG/M |
| Scaffold ID | Ga0334989_0015970 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3936 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005176 | Metagenome / Metatranscriptome | 409 | Y |
| F055433 | Metagenome / Metatranscriptome | 138 | Y |
| F059658 | Metagenome / Metatranscriptome | 133 | Y |
| F071979 | Metagenome / Metatranscriptome | 121 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334989_0015970_1681_1986 | F071979 | N/A | MDAWDIICPFVIPEFVNPFAISSDEDRWDDRKLTGVNLLKNWGKLTLNHCQNWQRDSFNYACTEDLTSKEWAQSLMMTSCDVLLVDRIDEKFDELDLYEQE |
| Ga0334989_0015970_2632_2892 | F005176 | AGAAGG | VQDPPEQEDKSSPSSSMELKFELDTRLTVSCVVAVASAYGLLTVSIALDSILLAFGNAVILLLILFVLFGWKELLGEFHKKRSTAN |
| Ga0334989_0015970_317_499 | F059658 | N/A | MKRIYEHAISLSSNECVFLNTSLGRKFHPIVEAGNGCDIGTWKSNHKGPNVNVNVWLVCD |
| Ga0334989_0015970_446_652 | F055433 | GGA | MTVVAMSSQFSFQSPSTACKTSVGVQTFLVGSLVGRMAGTPLRGGVSESLALITDEPHVDVDVRSLMV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |