Scaffold Ga0334989_0012850

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0012850
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4347
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045744	Metagenome	152	Y
F050782	Metagenome / Metatranscriptome	145	Y
F080916	Metagenome	114	Y
F096645	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0012850_2173_2292	F050782	N/A	MGYAGSADIFRAEMMKLMEALEYVQAYIDDPLVITRGTL
Ga0334989_0012850_3117_3476	F096645	N/A	MNHVFANRSEEDENFPLTMKEIVEAQKADPILKHLFKSNAVLSKGLELQLVENESCICHEGKLVIPKPLQWHATIWYHHYLQHPEHTRLKETMKAAIYWKGMRITIQSKNKVMQVLPNK
Ga0334989_0012850_3615_3743	F080916	N/A	MIDPAASWLKVVELPTITRVTTKKVNGKERTIEKEIFDKSSD
Ga0334989_0012850_933_1199	F045744	N/A	MLLRSLCRCFLGLFRAFFFEFSLLIGLFSNFPGLTFRELPILSPKTLSIATTAVTLPVLEFLIAISLALIVSSASLAALISWVSVESK