Scaffold Ga0334989_0010268

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0010268
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4798
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F030434	Metagenome	185	N
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0010268_1258_1452	F090388	AGGA	MALLRINCRVCAKIGPGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDSQVPTAEEILHD
Ga0334989_0010268_1433_1969	F030434	N/A	MAITEMAQIVQVILDRSQELQAAACGFARSTGEFITTPDRRYSRQTNINYHEFILENSEAVGSEIAVAQYMGLQNFVPTVHTYRDEADITVGNLGFEVKWTRYTNGHLIIHKDYPRLNDVAILVVNKSPVYQIVGWMPVLWAKKAKYYNAADGNFWVSQRELFEMDALRKSVYGITED
Ga0334989_0010268_3116_3319	F003067	N/A	MTAAQSLLAIAIGICTLMGFAAGLVRHLVKYYLSELRTDNNGGHNLRGRVDRIEAKVDSIYEMLLTR