Scaffold Ga0334989_0008511

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0008511
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5217
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001307	Metagenome / Metatranscriptome	726	Y
F040401	Metagenome / Metatranscriptome	162	Y
F050782	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0008511_1947_2264	F040401	N/A	VNEKRTPMYGHLPSKIEISTPWEALCVNLVCPYTLKVKVGLSIDFMALTMTDPTSAELPFIIRLMTKTVKEKERIIEEEIFDKSSDRISRLVNKIWLFRFPDANI
Ga0334989_0008511_2709_2852	F050782	N/A	MGYASSADIFQAEMMNIMEALEYVRAYIYDLLVITKGTLALPRRPFR
Ga0334989_0008511_3606_3770	F000211	N/A	MSYIYMVFEHLKQLWRGIWQHTHTITTTEVSPDLGELAEILDDVSVEMIPLHYP
Ga0334989_0008511_3820_3969	F000211	N/A	MVFEHLKQLWMGIWQHTHTVTTTEVSPDLGELAEILGDVSVEMIPLHYR
Ga0334989_0008511_4043_4168	F001307	N/A	MWMGIWQHTHTITTTEVSPDLGELAEILDDISVEMIPLRYR
Ga0334989_0008511_4247_4366	F001307	N/A	MGIWQHTYTITTTEVSPDLGELAEILGDVSVEIIPLCYR