Scaffold Ga0334989_0005333

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0005333
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6389
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003888	Metagenome / Metatranscriptome	463	Y
F009252	Metagenome	320	Y
F016144	Metagenome / Metatranscriptome	249	Y
F021250	Metagenome	219	N
F033698	Metagenome / Metatranscriptome	176	Y
F037581	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0005333_1970_2863	F021250	N/A	MIIEENVIGWNNQPVKTDEVIYPQSKDEQAPKNYFLAIFCGSRGSGKSYLFTKLIKTLEEKKVYLNDMIIPQRIILISSTAQSDSNRIFKSLKNLDWDNDVIEDYDDASLRSKMDELKSDLDHSKDYKLYKTAWRNFVSCKKIEELGDDDLKLLYKFDFIPFKEFEKPKYPDGFLIHWIIDDMLGTNIFKNGRSAFTNLCIRNRHLIPGNIIIAIQSIMNIPKTIRLNANLLALFKFSDSETILEDVYPLFSAFIKEEQFKELYEYSTKEAHDALVIDATRGKPIFKKNFDKVLKIS
Ga0334989_0005333_3163_3891	F033698	N/A	MKFFRYKQVCRLNFFGIDDECNDIASSYYNTKFKLFNNTEINTKLLRFRIENLRDIKLSQNAKLILESVYIPCVINNNLDIKHNSNIILRLKNISDTKCFDSSNDNSNSPILFSHSVQARCQTVVDTDTTVLAVNTTTYNNNIFNTIKYDNGISFFNPSPDKLYNFTIPNTFTNNSIFEFEIIYDMPVGVNIVQADDRGEFYKFQCSLIICDEDEEDLISNDSNTVNYDKFKPHFPLKKPNQ
Ga0334989_0005333_3894_4799	F009252	N/A	MDKINVYINSKNRDSNEKISNFTVRIPQNLLRLDHGESFSLNVNGFYCYNSWFNCIDEFNNEFQIILKNINNEIVEILNYKLNDGNPNVNDVKSNLNELLINKVQVSYDKQRNKFIFKRSLPVTTQYNTMYLNILNSEDFLGFYKSDRDNNILLPYLQNVFSNNIVNILGDEAIIIKINGDCILAGNTVDNFGTETYEPSNIIFMKPIDVPSNELLKYSNEDSGDSFHYKLANVEQITWFTLTVHNQDNELIPNFSDYILLLQFIRHKTEEGKIETSLNALVDYVKQIYLLISHFLFPAM
Ga0334989_0005333_5886_6125	F037581	N/A	MFDKIEYELLILKYMPKEEYKNLIKTYMEKLDIPYITAKQYICLKQIKQFEYENKIKYDQVFLNTYNDIVENGYKLSML
Ga0334989_0005333_6133_6291	F003888	N/A	MDVVNEIEILETDVKDCNEKCQRVNCSAIYDAIMSSLKLLYDLIFMCAKKKT
Ga0334989_0005333_77_1021	F016144	N/A	MLMLGIPILVGGVTAANNTASKGEVGRAVIGADIAARAGALAAENADYTLNNLEFRCVRYHMGPEFDIAEANVLQSGRKYKLWFPNYTVSSGRPVPANNKTTTERFSISTQSLDYIIGTFRLSNYDTISQPLNTVFSIQNALEEGLTKCTAEEQVSAGLRRVYNQSRYFAHNGDSIVTSKWRIGNNSFEPQTLEEQYNSLLQHFNINQDTMSGIYPGINSLGAFREHSYASICSLNFPEKGEVFTVSGLDTEQTPASIEWVVNASTFTPAGGLINIANVGNYLLTDATTCLPYLICAYSSHLEIGAGRVINLIP