Scaffold Ga0334989_0004472

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0004472
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6899
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001307	Metagenome / Metatranscriptome	726	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0004472_1011_1130	F001307	GGA	MWQHTHTVTVTPTEVSPVLGELAEIIDDVSVEMIPLRYH
Ga0334989_0004472_1165_1302	F000211	N/A	MSYIYKVFEHLKQLFMGIWQHIYTVTTTDVSPDLGELAEIFDDVM
Ga0334989_0004472_1408_1527	F001307	N/A	MGIWQHTHTVTTAEVSPDLGEFAEILDDVSVEMIPLRYH
Ga0334989_0004472_1884_2048	F000211	N/A	MSHIYWLFEHLKQLFMGIWQHTVTVTTTEVSPDLGEFAEIIHDVSVEMILICYH
Ga0334989_0004472_2128_2247	F001307	N/A	MGIWQHTHTITTTEVSPDLGEFAEIIDDGSVVMISLNNH
Ga0334989_0004472_2527_2646	F001307	N/A	MGIWQHIHTVTTTEDSPDLGEFAEILDDVSVEMIPLYNH
Ga0334989_0004472_2681_2845	F000211	N/A	MSYIYKVFDHLKQLFMGIWQHTVTITTTDISSDLREFAEILDDVSVEMIPLRYR