NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0003516

Scaffold Ga0334989_0003516


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0003516 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7672
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053753Metagenome / Metatranscriptome140Y
F076869Metagenome / Metatranscriptome117N
F098653Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0003516_1208_1543F053753N/AMIMNHQLKFGYSQLGYNILVKLNCKISSTDATSLEKEYNEICIMQTRNGYRIEGCFNTKKDNFYCYTKLEDFKLSLALKLNDYKINKLIDKNQSLLNQANFELNIANLDEL
Ga0334989_0003516_1822_1974F076869N/AMITEITKLVTSAQKQNVFLTQEYIDALYELDIQTIVMLRESYIAEKLVSA
Ga0334989_0003516_336_548F098653N/AMCNTITSVLGFDLDAEITDNEGNVIPSGTTCNYIPEEKPEYIFNVDYYNKWTNFNTGLLDKIRDYQKYNL
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