NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334989_0002848

Scaffold Ga0334989_0002848


Overview

Basic Information
Taxon OID3300033984 Open in IMG/M
Scaffold IDGa0334989_0002848 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8462
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023295Metagenome / Metatranscriptome210Y
F035672Metagenome / Metatranscriptome171Y
F063343Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0334989_0002848_5129_5989F063343N/AMNYLILLGILGLFILGNKVRTNWVSGIKSTLIKLMIPGADRRLFSGFTQSTFSWVRNPASWVRVFNWTGAAAGINGLGGVGGGTLISRRHVLLANHVPYPARPFDIFFVNASSRTFTYKVTNVQQVGDTDIAIGTLDRDADPSLNVYRVLPDNWTQYIANKVENFNVMGVAGTNYSFVLPVLYSGQNRKVSTADVVNISLGLAGVNIPAFEVARAFGDPIIGGDSGNPIFAMLGDELVLLGAWYTGPDRGFSVGTFPWLITQRGAIEKIMGQKLRIADMSGLDRIA
Ga0334989_0002848_5986_6237F023295N/AVKLLHRAYSKAKLLLISKRSLVLLSMLQSMGCQTRVILVPDGQPVQLAESVRAKVYAFDATGKPVPSSNKVILPAGWYVLPRK
Ga0334989_0002848_6459_6647F035672N/AMSNLHETLRDLGIGVGGPAGGLFIATIVPDPIMANLSVTLGSLAALTVIIKNVLDIWNNRNK
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