Scaffold Ga0334989_0002671

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0002671
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8676
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000211	Metagenome / Metatranscriptome	1583	Y
F001307	Metagenome / Metatranscriptome	726	Y
F001998	Metagenome / Metatranscriptome	606	Y
F005772	Metagenome	390	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0002671_1206_1316	F001307	N/A	MGIWQNIHTVTTTDVSPDLGEFSEIIDDVNVKTIPI
Ga0334989_0002671_1318_1524	F001998	N/A	MNEDVEPFKLHPISMSYIYYVFEHLTQLWMGIWQHIHTVTTTDVSPDLGELAEIIDDVNVKTIPIRYQ
Ga0334989_0002671_1760_1951	F005772	N/A	MGCSLKCSTASTIASWDHFHIYIIYDFSKLSQIWGYVCGGNSVSVLPYAHPQQCKVFKHLIYV
Ga0334989_0002671_1959_2156	F005772	N/A	MDMGCSLKGSTASLIAYWDHFHTYIIYDFSQLSQIWGYVCGGNGVSVLPYAHPQLCKVFKHLINV
Ga0334989_0002671_2158_2352	F005772	N/A	MGCSLKGSTASTIAYWDHFHTYIIYDFSQLSQIWGYVCGGNDVSSVLPYAHPQLFKVFKHLLYL
Ga0334989_0002671_2360_2566	F005772	N/A	MYDMDMGCSLKGSTASLIAYGNSFHIYIIYDFRKLSQIWGYICGGNGMNVLPYAHPQLCKVFKHLINV
Ga0334989_0002671_2757_2948	F005772	N/A	MGCSLKGSTASTIAYWDHFHTYIIYDFSKLSQIWGYVCGGNGVSVLPYAHPQLCKGFKHLIYV
Ga0334989_0002671_5346_5516	F000211	N/A	MSYIYMVFEHLTLLWMGIWQHTTHTVTTTDVSPDLGELAEIIDDVSVEMIPLLLKS
Ga0334989_0002671_6999_7229	F001998	N/A	MGKLSQYAITEAVEPFRLHPTSMSYIYKVFEHLTQLWMGIWQHTHTVTTTDVSPDLGEFIEILDDVSVEMIPLCYR
Ga0334989_0002671_7551_7757	F005772	N/A	MYDMDVGCSLKGSTASVGAYWDHFHIYIIYDFSQLSQIWGNLCGGSGMNVPPYAHPQLCKVFKHLIYE
Ga0334989_0002671_7795_7959	F000211	N/A	MSYIYKVFEHLTQLWMGIWQHTHTITTTEVSPDLREFAEILNDVSVEMIPLRYC