Scaffold Ga0334989_0001871

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0001871
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10292
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037584	Metagenome / Metatranscriptome	167	Y
F043772	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0001871_64_186	F037584	N/A	VINAVLAIIAGGGQVIVVIYREGVEIYYFLLYFIDSAKTL
Ga0334989_0001871_887_1000	F043772	GGA	MLHRVMRSVLHRRTAMAIQMARNGGAFVRRRRLFRLL