Scaffold Ga0334989_0001086

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0001086
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13021
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025680	Metagenome	200	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0001086_11386_11655	F057894	GGA	MRQQDDTFTGHLTPIGSVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSDAGYKTADVIIYNKVVRLKLTEEDIKRSKRLSL
Ga0334989_0001086_11844_12104	F059603	GAG	MELTTEQKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRQHLINANPESIVYTYYLSRCAKWIRTLKLHNQKLIPIFAANGTDS
Ga0334989_0001086_204_1157	F070850	GGAG	MTEEATQTTQSITPSTGVVLLAFGKIQYYWAAFNLAFSIRKHSPNVNITVLFDDSGKAISQCPEIIQYVNRIGNIEQQDIYTNNKLDPGKVKVNLYKYLPYERNLYLDVDAIALKDIEPMIDELIQSGKDYVSHTVGYHTIDKGRDFKEMQWAWADKMWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNNPIAIKDLRMKWGGGQPDELYMNVALAICGIDPALKAYTKNSGSEGGMIHFAMTRGLSFQDITHNYYFQSYYGGAGFTPRFYIDWLDRMLSADFKAIGKRHIYLISRIAQNKYADGKR
Ga0334989_0001086_8287_8913	F025680	N/A	MKYIKELKGRVRSLWGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGGEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERQDTVIHRDILLNIAATWIIRDDENPDIVNSDIHNYKLELFEQLSKGGAKDFFSGLGIDPLMPLLSMSPEDFQILWEYNLQQQRNLRDSLFRLSSHRESGRRKQETT
Ga0334989_0001086_9323_9649	F065768	GAG	MSVCSPCYDAGSYVNACLTEFTFGIVEADTEFTVWLQHNATQKIMQFTATSDAEGYITIEGIQLDPLQGYTIWATIDGVQQDITVDGDIYTCLSFSAASIGQSPVVIP