Scaffold Ga0334989_0000199

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0000199
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30848
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F036240	Metagenome / Metatranscriptome	170	N
F071242	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0000199_10539_11078	F036240	AGAAG	MANEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLQIKGQSINISVFAKGKASQYFLARENGRRPNATPPPVSAILDWMRIKPIKLRDKESGKFKKPTETLKKQVAFMIARKIGRDGIKGWKAFDYAYENIWDEYEAKVIDAYGKDFGATIENQLKDI
Ga0334989_0000199_23514_24269	F012871	N/A	MENSIQTLRSASTTTLTTTQRVDRAERESAFVADYELPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKESEMAVNDDSWRRMLAEDIASYKKGKYTVIEIRAVSLMRWLEESKQITVDTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIHFEGMRELYKLYLSKQ
Ga0334989_0000199_26515_27096	F021113	N/A	MDKREYQPDAVIVIIATSVFWMLVCLAFWNFNPKIQTEIQIQKQDSIIYYNSGEYDRLLQEEIDLYGTYRRYEDAQLTAKETYRTRRDTILVLDTIRKTDIVYLINSCDSVIASDSLVIDNLQEQINIKDEKTNNLQEVVGAYEQKTNLLSEEINTLDADKKKLEKQKKRRNHALVFTSSVAILSTFVLSILL
Ga0334989_0000199_28450_28698	F027518	N/A	MNTETEIVLIHEQLQEMDKKIDRIYNVLIGDDEMKIEGLVSKVQKHDKYISNQRLQVARLGGIATAAGVVGGLIVQLIIKMI
Ga0334989_0000199_6476_6694	F071242	N/A	MEATSKEHLQSKAGAMVACLEFIKLNIKSESNYGRIANGKNKLSKWLCRLHKLTPIYVNVAFWIFIFYIIFF