Scaffold Ga0334989_0000003

Overview

Basic Information

• Taxon OID: 3300033984
• Scaffold ID: Ga0334989_0000003
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 232931
• Total Scaffold Genes: 450
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (12.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046895	Metagenome	150	Y
F068829	Metagenome	124	Y
F082354	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334989_0000003_193687_193890	F082354	N/A	MIQNKVYRLKKAAEVAKDMPLPAGQEIEIVIDVVYVNGHMVPPNMQRLFYDWITNNATLFDDVTKKW
Ga0334989_0000003_66323_66598	F046895	N/A	MTQFEQAQEQVKNGELRTPNVSAGAKTVDYFGYQLSVHKFNLSLMAKGMSFKGITFTQIKKYYGLKGRSAKDCLPQFLEIVEKYKQELNPQ
Ga0334989_0000003_69778_69978	F068829	N/A	MKSYHVTIMSIDPNDHYGREQGDDHQKYGLTIQATSDKDAQEKGVVQFKQEYGDLPIFWVKSFEKD