Scaffold Ga0371488_0040176

Overview

Basic Information

• Taxon OID: 3300033983
• Scaffold ID: Ga0371488_0040176
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3028
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: McLean, Ithaca, New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023078	Metagenome / Metatranscriptome	211	Y
F064327	Metagenome / Metatranscriptome	128	Y
F086482	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371488_0040176_2839_3027	F086482	GAGG	MLTDRETYRQAVIALYLRRPDTPRRLSRFDLRLLDQFWQRQIPLTVIETAFLLASLRRAARRP
Ga0371488_0040176_388_594	F064327	N/A	MTDQSSLRSSPCVNLTVRPAPARVEAPAVAEFRPSSREAIRAGWVVCQICGRRGRWVNPFSEVKHDFR
Ga0371488_0040176_79_345	F023078	N/A	MVEAPLGAQTLFIAAVGLAALQTAGFFPATGTAITLAAVTVAAEIKHRATGRKLTDALAKNLGTSHRHRFREEALDNRRRSWQDDSRD