Scaffold Ga0371487_0053055

Overview

Basic Information

• Taxon OID: 3300033982
• Scaffold ID: Ga0371487_0053055
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2349
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: McLean, Ithaca, New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001473	Metagenome / Metatranscriptome	688	Y
F002408	Metagenome / Metatranscriptome	562	Y
F091190	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0371487_0053055_60_620	F002408	N/A	MDFAIDYRQQQPQAQVTQPKPSQPAATAPAVPGEMLLNSTPVRLVGVAVAPKASLGVLIRDVYRRQDEVFIRYSIENRSSHTFRTGQPSAVSLTGLRFDRSLWTFQNSQLGINVASRLKADDAPIPVKITHSEPGVAEVAPGEARLGVLALELPRAKPDAKTAQPTVLQILFPVDHSGNLTATLVL
Ga0371487_0053055_640_873	F001473	GGAG	MEPEYQTVSQMYERLVSMIRQHNDTGFRLAVTDAALQPRNPFEAANRRRPKPAVAIAISLFAVLALVFLYFSFQHKG
Ga0371487_0053055_879_1313	F091190	AGG	VSIFNRELLPDMASTADTMAGEPEDARVENEPESRLQEILFSEVLTSVCYWSMVLLLAIVGAGLVYWRLTHPGPSAEPVGDPFGVTTPAWMIVSLPPLGVVAALGQAAWCAARGQRVWRMLATAAGLIAVMGMTTLLETNLVAL