NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371487_0002840

Scaffold Ga0371487_0002840


Overview

Basic Information
Taxon OID3300033982 Open in IMG/M
Scaffold IDGa0371487_0002840 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19186
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: McLean, Ithaca, New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002889Metagenome / Metatranscriptome523Y

Sequences

Protein IDFamilyRBSSequence
Ga0371487_0002840_12603_13433F002889GAGGMNRNKCILCFLVLTLAVLAACSSQPTANQSKKAWAPPDKIQGKIQVLLESTGASDAALNAGGSSVYLWEGTRRYRLFLRTPVDVVHGNQYVVEGVYAQKAIDDLGDPDNGKNGYPLPASCSHVVRMAWSGLSFDAIDADASLVCARIKRYPARPLFLVSRIRPATAEDNAGGAAEAKNDTEAEEKDVKEVTVPADKQRASLIEGPAVQPAPLWEPEGGTVHCKVDIDTKGKVYELETGAQLCEAVPWSQFRYQPPVQGGHPVKVRTEVEVRFEARK
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