Scaffold Ga0371487_0001000

Overview

Basic Information

• Taxon OID: 3300033982
• Scaffold ID: Ga0371487_0001000
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40007
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: McLean, Ithaca, New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000771	Metagenome / Metatranscriptome	897	Y
F061479	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0371487_0001000_18661_18924	F000771	AGAAGG	MKKKFLATIALALAFATGAVVSAQVRDWHDLDAVHKHVVEAIHEMEHARAANHYDMMGHGERAEKALRDAERELGLAIDAAKASSEK
Ga0371487_0001000_38747_39364	F061479	GAGG	MQRAVLVLGFLLFASSVLPGIHAQSQEAPGGDSGLTADYPRYQAGVLIEGTEWTAVANQNPAKTKVGHGIAASLSYGVVPAKIVAEYEGEHARTQVETVQPVICVCHFISLPGEPVLVRLHPKKGSRELDGGRMTVYPVVGGSKMADANKSDLIPADVSHPDPQVWLIRPQSPLEPGEYALMLGTQNISIFPFTVAPASGSSTAH