NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0181201

Scaffold Ga0334982_0181201


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0181201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006107Metagenome / Metatranscriptome381N
F013291Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0181201_3_446F006107GGAMNAVALRAEKAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPMQRTDLTCEIEIAVELQLSADDTDEAAVLTTVQVLDNRILPLFDESGASALDAPSNDASGPFTAQFAAPLDFGASSISNRSRTF
Ga0334982_0181201_443_1051F013291N/ANITRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTANLNGGHGLYGKRMKAAASALMKKSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPAGYRAPKKTNSALVAMANQYGLPEENVGVHKGTVAHGVQAVPGFNPTAFVSMRTGIADNQYNRVSQIYNTAMQKAMDDETTEMVNHMTEALLANGKVLEDNGISIK
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