Scaffold Ga0334982_0122137

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0122137
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1352
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034068	Metagenome / Metatranscriptome	175	Y
F056318	Metagenome	137	Y
F067414	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0122137_32_205	F067414	AGGAGG	MTDKERIVYLRSALKNLVQSADRYIDDGSWIEHLTLDVEFAKGVLKATRLNKESKNA
Ga0334982_0122137_586_837	F056318	GGAG	MMFKHVTPHPWTAHGSTVWGYENEHGQPQVGSCVNKNLPVATQRANARLIAIAPQMYEIIQKMQSDEAKALVRYMEKEIDHAD
Ga0334982_0122137_827_1078	F034068	AGGAG	MQIKTVKRSDQEIDYDRLYKAYEGLIEWIGTNDVDGQETLGLLVKAAVSLAVTNDRPKYELLEVVSVTYDIERSVRPRADEVH