Scaffold Ga0334982_0101706

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0101706
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1514
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007691	Metagenome / Metatranscriptome	346	Y
F036551	Metagenome	169	Y
F093483	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0101706_131_334	F036551	AGGAGG	MDTLEILHALSTEARECELCGSGSWRILHAGDESNCECEGECLRVCDNPLIEDGCDGVAILINEEGK
Ga0334982_0101706_3_131	F007691	AGGAGG	MDTLEQLINEIYEDNYSHLEFNDNMGGECDCPIHITLNTIVKY
Ga0334982_0101706_650_829	F093483	AGG	MTIERVRQSGALVVSALVNWEGVKWLESATYYGYTVQEAKRSFKESCARLNYKIEGEAK