Scaffold Ga0334982_0081354

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0081354
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1734
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037206	Metagenome	168	Y
F044373	Metagenome / Metatranscriptome	154	Y
F045069	Metagenome	153	N
F102853	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0081354_1257_1535	F045069	GGAGG	MKYLLLLLAAPAMAAPPDYLTYTNDISVQTVLTQDRPNWCHGMKMAFDIDGLNRAYYGCWAASQGFAHIEMLDGSKRIIPMSKFTKPKEETK
Ga0334982_0081354_192_380	F102853	AGG	MKELVVIYYAAIVVATVGFLAFFVPEPRRPTAAECGVSEIAPDMSTRDREVCRQLRQHRHRM
Ga0334982_0081354_377_559	F044373	AGGAGG	MLRDGYFIREEPPKIGAHYIPQFYQRPSTPEERFVQDIMLGAKPYYESPMVKFLGRLLSV
Ga0334982_0081354_549_794	F037206	AGGCGG	MKCQQCGAKTHVVNTIQQPGGVRRQRRCPSCKNNAYSAEVWIAGNVMVGKSIYTNDEVALIKRKGVDARRANEDRRKDDVT