NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334982_0063023

Scaffold Ga0334982_0063023


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0063023 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2020
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006107Metagenome / Metatranscriptome381N
F013291Metagenome / Metatranscriptome272Y
F032255Metagenome / Metatranscriptome180N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0063023_1251_1733F006107GGAMNAVALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDEQDVMPNFPRLVVSTNSARPVQRTDLTCEIEIAVELQLSADDTDEADVLTTVQVLDNRILPLFDESGASALDAPSNDASGPFTAQFAAPLDFGSSSISNRSRTFTRTFTLYCSATI
Ga0334982_0063023_1730_2005F013291N/AMANQYGLPEENVGVHKGTVAHGVQAVPGFNPTAFVSMRTGIADNQYNRVSQIYNTAMQRAMDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0334982_0063023_753_1184F032255N/AMFGVNNSDAVFTGLTSIESYDLTHEADTEEVRNSAGEVVGHIGYNERVVLNLNLIPSGSTAAAALAFCSLAPVNGTVRISGAPIIAMMGYGDILNTEDILMGGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTAGAAKVLNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.