NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0050314

Scaffold Ga0334982_0050314


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0050314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005528Metagenome397Y
F021759Metagenome217N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0050314_1045_1311F021759AGAAGGMDAGLAVVFAAVVAALGGIAVAIIQMRNLANENRSDHAIVQKRLDTVIDMVGKTSAKLTSHLDWHVNTSTKEPRKDLKVKQVATRKKK
Ga0334982_0050314_1697_2260F005528AGGAMRILSAIMATVATLTMSLGIAHAAYAPDVTRSDVEALQPLWQPDRLDLPKPIRFRHGDVSWLPSLAKQAGWPDNSIDQLTQIVLRESGGCPNRRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDTKRNKWAAICRELNICTQAPLLDAYTNLQAGLVLYRISGFEPWNPCNWTVCKVSTTSMP
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