Scaffold Ga0334982_0030310

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0030310
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3090
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009402	Metagenome	318	Y
F018368	Metagenome / Metatranscriptome	235	N
F038093	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0030310_1191_1526	F009402	AGGA	MKKLDEQFESAGFKYKQTHREDMFAIYERKYINSTKDSHYESIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCTTKKDAYTRLDKMMKEDVINKEAANKKAERKNAK
Ga0334982_0030310_2830_3090	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVLKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWGTQLSIS
Ga0334982_0030310_834_1091	F038093	N/A	MDKIKINFLILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHIMFGYFVLVKGCALGIEQTINIIAHQDAAKAIEEDTNKNN