NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0025925

Scaffold Ga0334982_0025925


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0025925 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3377
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081046Metagenome114N
F088509Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0025925_1704_2375F081046AGGAGMTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFFDCLPQYHGIFEMVSYVKVGNKGDVIDLEIWPNKYQQYRFSNRTWTEFVYAHPEINKADPKDILFDKLDDAPAKELPETYNMVAPFGISQGHKRDPLQIIVEARKKCGENNFFVLCPPGMEIKGLRTYTAPNIPEMARAIRGANEFWSIDSGQMAIAAGVRKESKVVYFPQTIEPFDKDNIFIWDSVEIN
Ga0334982_0025925_2712_3122F088509N/AMISIERQIENGLATALAGISGVNIYKSDTEGQRLLPNLVIQASIGSEEIIPYSGVFRCPATITYATRADTTTRSTFDAKFQEILQVMYQEPNLASVLTTATLKVFLANVSSESPEIRADNRTWAKTLSLDISCTSV
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