Scaffold Ga0334982_0024596

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0024596
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3481
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005382	Metagenome / Metatranscriptome	402	Y
F055663	Metagenome	138	Y
F073280	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0024596_3232_3480	F005382	N/A	MAPLMTKTDKIKSFIFNAGSSIVNVRFVKADGSVRSLCFNPRDSKEIKGTGTAVKKPSIIRCRDFTIARTAGEGAWRSFDCER
Ga0334982_0024596_715_894	F055663	GGAG	MTDFLNLKISQKQIVCPKHGTHKHYISSDIEGHEGHWCMLCWLESLGPSLPLVEEQSND
Ga0334982_0024596_887_1207	F073280	GGAGG	MTDHLTSRAQRLVEEFEYGESIREGIANVLLHLAATWANYSDGDDCWHGVTVNTLEEFATELTAPTLLDRALAGDRVAARQFLQEAGFVDEHGQLTAPYRLESPDD