Scaffold Ga0334982_0019098

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0019098
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4008
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y
F093237	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0019098_1147_1305	F003212	GGAG	MKDRYLVTLEIETYDGDPREWDWEKLSTGEDVIKIIETQWQGRVLPKEGESK
Ga0334982_0019098_151_441	F001477	AGGAGG	MTKEYITLAHYPKESNLYTIHPRKSELILLYEVVDESGRAEWGGANAEQAMQWLTLAPDNARLLVSAWDSDEEDAHLVGQTIDITEIIQRAREIGR
Ga0334982_0019098_2094_2276	F093237	GGAGG	MGYKYTLAEAGKMTNQELLNALLAREVAPRTIVGTGYINARQVAIEYLQGEIAKEGDSNE
Ga0334982_0019098_2438_2596	F018135	AGG	MTIERVAHSGAYVLSDFVGEGAGEYLFTRTYYGYTLAQAKAQFKIALAEEAK
Ga0334982_0019098_434_592	F000821	GGAGG	MNREYLEAKVDLCLNQAEIDLKQEEIARAIANLRRANSALSQLFGFEEESND