Scaffold Ga0334982_0018153

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0018153
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4121
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F038106	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0018153_128_445	F038106	AGGA	MKLNYQQKEDIMQSIFANHLSPIGFRSVYKAVPIDNYEQIKQFIDFTKYFVMFRGPRPSFNQSSTRKRDAKAFDVYERDARTVRELRIEREAFLRGVEYKKSHTV
Ga0334982_0018153_647_931	F006060	AGGAG	MLKFENVAKVGDIIRAYDFKPCAGRDDAFIEGVVEQANCNESGFNSYKVTVTVDKFKKYETKPNPRNRVGKIVFVPHQTSFMEFDFRVINLSRG