Scaffold Ga0334982_0016051

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0016051
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4398
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010688	Metagenome / Metatranscriptome	300	Y
F015354	Metagenome / Metatranscriptome	255	Y
F061810	Metagenome / Metatranscriptome	131	N
F083941	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0016051_1829_2041	F061810	GGA	LASSGGGSVTPIDPPILRRDLLQEDDFFIRLEDNTSKIVLSLGTYDRITTEQGTDLLLTEDSSKFILTVY
Ga0334982_0016051_3767_3973	F083941	GAG	MPPVDTHELEVRIVRLETTIGDKDSGLVSDIHGIKACVEGLKQFQFKLFGGLAVIIVIAQMFVRIVLK
Ga0334982_0016051_3970_4149	F015354	N/A	MNPNITSLIRHLLSAAGGFLVAKGLASADQVAEVSGAAVSIIGVAWSIFNNKKNASKTE
Ga0334982_0016051_883_1278	F010688	N/A	MKPKTATIMVIAVGPKGHHREIGGAPSSHSACGCEEADNNAPMISIPVEALSTDTEDGQGAMPEVGDEVLLDDVRGVLKKLDNGEAYVEIRSVNGMPAEYESKEDKKEMAGPMDKEGMQKMAEEYDSEMEG