Scaffold Ga0334982_0013300

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0013300
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4853
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006743	Metagenome / Metatranscriptome	365	Y
F020863	Metagenome	221	Y
F041644	Metagenome	159	Y
F051794	Metagenome	143	N
F052570	Metagenome / Metatranscriptome	142	N
F078660	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0013300_1290_1517	F078660	AGGAGG	MKPVNFYEVMDHKAEVEWGGASVSEAITWFRRGLDRSILVSVWDEQSEDDFKLITDKIDVTALVLATITSERERG
Ga0334982_0013300_2153_2584	F052570	N/A	MKERKLMFKMKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYEGREYRVVCVGEMRILYKGEIIRYCDDLVRAGIKRDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIVDEELVNV
Ga0334982_0013300_2789_2944	F041644	AGGAGG	MSLDFILERLTSVQVGGFWALIQVIIYALVIYLGLVIISKITDKREREGKR
Ga0334982_0013300_2941_3270	F020863	AGGCGG	MQTTMEDLRRLVGVLEELVRPLLEGEEVEDTYESNKRPHLVLQEGSKTYGRAFRVHFSGGSKYGSGYWEPRGFSDYLGGTKAEAERTLRSLIAGIRTGQMISEKEEASK
Ga0334982_0013300_625_918	F006743	GGAGG	MRTENWQRNTRGLRLVGEGESGSAYTFFGPVRAGLTTSQATSKEAQLLELLKCLEREVENLRSKYCEAYVTLICVTEHLVRLNALLLNTDTTRLKDS
Ga0334982_0013300_915_1220	F051794	GGAGG	MRTIDKRRAYSEKRAVWLRNYQRARARALTRLAQQYPDQYKDLLEQERLADESMAKTWLDITGATSISSSLGVLTDRNNDTSRSEQANGDKQNEGNVGGEG