Scaffold Ga0334982_0011684

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0011684
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5201
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0011684_3047_3250	F048842	N/A	MKNKAGVVLITLLPIILWGLALFGEIRCIYKMCTCNWEPVGKAEIVYTVGTFTGAGVVIGYLNIEDK
Ga0334982_0011684_4698_4967	F047578	GGA	MKVICIDSSNRPAKIPIEQWIKQGETYTIIKIVKMGLQDGRYGVLLKEVQMSADCFPYEYYDADRFIPLDTRVLNMEEETVKEADLELI
Ga0334982_0011684_895_1350	F019119	N/A	MESFLGIPSDTSFKMEKKIMDEMLALSADIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDAEIKNMIAMLESSDEENLHMVTLSIKSFRDLRILEHGEYSKVNQVYWKIAKDYPHEILNHEVFMQTMAAK