Scaffold Ga0334982_0010357

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0010357
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5545
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F017997	Metagenome / Metatranscriptome	237	Y
F031459	Metagenome / Metatranscriptome	182	N
F049589	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0010357_1419_1904	F010835	GGAG	MNAVALRTERALVDWLTAQDWSASPLGTPACLTSYGHGAFADADLEDRMPDFPRIIVRASTAVPVHPLDRTCELDVTAILQLSADDTSEPHLLAVVQVFENLLQYLYVDGNISELNADDTDPSGGFNAQFAIPTDFGINDTSERARTFTRSMTIFAAANAI
Ga0334982_0010357_1901_2509	F049589	GAG	LDYFNRPVGERRRDKKTGKLVGRSRELRVVHLIAQAKNKKAGKEGLYGERMREAAASLRRRAAGSVGYLKSCVVKGIKKLSPSFTQFGGTRRARKGSAGVRSIAANQALLNLANQYGLPTENVSVHRGSSAYSYNAKAGISPHSHVRMNIGLADNQIGKVNSIYAKAMQQAYDDEAKELEIHIRAKMEEAAEVLEKHGVTVK
Ga0334982_0010357_2680_3135	F007260	N/A	VNLIATSLQLGMTVLQGAMGNPSFLWQGQLVRCLPAAITDSNSVIAGGFQDNVQVRLLVKLADWRLADSTLVTVDASVWSCDVGSNADRLLQESGSLILQENTDRLLLTFGKMIPVVGRLVTYDGRQLRIMSARRDGSGAYYVLDLGAKTK
Ga0334982_0010357_3800_3943	F017997	GGA	VNIIEQIITALLKWLTGLAKTPPTAEDAKPDKELKQKLLDRIDRAGK
Ga0334982_0010357_4116_4286	F031459	N/A	MQTDTNSSSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFVAAAIGLWKALKK