Scaffold Ga0334982_0009668

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0009668
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5742
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Rubinisphaera → Rubinisphaera brasiliensis → Rubinisphaera brasiliensis DSM 5305 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004694	Metagenome / Metatranscriptome	427	Y
F033772	Metagenome / Metatranscriptome	176	Y
F088772	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0009668_1193_1573	F088772	AGG	LTQVLGSAVGELKEWSASKRRIAELAAMKEKQIAIAEVEAFAKAVEGTLGSSYAPPENAPSWQHGLLAVAAFSTQMVRPLMVAGACAYIWTRPPEQLAGLQPEILTVSFACVYFWLGVRHQMTRTK
Ga0334982_0009668_1815_2069	F004694	N/A	MNTVIAISPVSVWTPAGTKSATQFSVRYVNYVNGPAVADCQLLDAAGAEVASQLVNATEAQTAAWTDDAGFYKVLAQNAGLTPL
Ga0334982_0009668_4664_5062	F033772	N/A	MTTYLTLDCALRAETDPTAISNLERKGWVVTVPPSYDPATEQAPVWENCGWVVKPIPPPAPYRVSKDTITSRVLDAGKLPDLMTLIAGLPAEQQFLWDNYAWFWNNNPTVNAMCVQLGLDPAVILAPDPYLT