NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334982_0008581

Scaffold Ga0334982_0008581


Overview

Basic Information
Taxon OID3300033981 Open in IMG/M
Scaffold IDGa0334982_0008581 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6138
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032962Metagenome / Metatranscriptome178Y
F056345Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0334982_0008581_466_783F056345AGGAMVFELNRQRGISLATGIERDLNQCQIRVGGKLVGYLPFGESPQILAIFEFPHDALTADEIASLEMQLEAIQGYPAKVLGPEQVSRTFVKAALEAIAQAKDEEDDE
Ga0334982_0008581_797_1219F032962AGGAGMAALTVADTGLGATISGTGLVTTQVVSIGEMTISVDTLDITSLDTAGFEALRPSDLRKNPEVDVVFNWLGAAIPITTAMIPTSEPYAGISVTVTLPGAGSFQGTAFVKEVKTPKLAKGEVMRGSYKLQFDGATDITFTPA
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