Scaffold Ga0334982_0008531

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0008531
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6155
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012771	Metagenome / Metatranscriptome	277	Y
F013755	Metagenome / Metatranscriptome	268	Y
F057925	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0008531_1268_1447	F013755	AGGAGG	MSDTPISDSTPHNVADLGMRCRWLERQLNAANERIKRLEEENDALRADLLLWDDKEVKL
Ga0334982_0008531_1444_1602	F012771	AGGAG	MKPKPKRPVAKMFVVSDDTHRRLKEYAAKRGYKLQYVADEAIAEYLKRQEAK
Ga0334982_0008531_3458_3631	F057925	N/A	VTYRNRTNRAIVVEILADTAELRLGELRWPVVVYRRLDNGTIYVRSRAEFDAKFCPE