Scaffold Ga0334982_0005221

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0005221
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7917
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039629	Metagenome / Metatranscriptome	163	N
F057211	Metagenome / Metatranscriptome	136	Y
F065767	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0005221_2376_2615	F057211	N/A	MLKDHHFILEQSGFSLELESFSNEGIVLDLFFGNGKSLTLELYDDLNERFTDHYRVVCAILDPFIVEQLEANVRQCFTK
Ga0334982_0005221_4259_4705	F065767	GGA	MTSLTQEQKDEIVRLYKLKVMNKNIATIMNISKHLVNNYIYKEYLLTNERAKNTCSHMKSADQVLELYKKGVPYKEIMYMTGVKYHHLCEILKLTDHRRVHGLSIKIVRQIERMVAEKWRTCDIAKELNLDYNRVSHWVRKAKKEGVH
Ga0334982_0005221_7219_7440	F039629	N/A	MIEALDEVSEIPFEVFWDKFMEQRPGDYDKTYTQGIWLKMREANRVLAFEYLCRFGTDYKTPVLHLEAFDLPF