Scaffold Ga0334982_0004614

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0004614
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030376	Metagenome / Metatranscriptome	185	N
F033721	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0004614_23_205	F033721	GAGG	MRWIKKEFDEDGKPEWAVYIDEAGEGNEEDWSHFDTYPSRDEAVEACWKFTWEDYDCNDK
Ga0334982_0004614_3147_3512	F030376	GAG	MKAIITMTLTAMLMASVMADDDEADAADFVGAVLKRNGFSCGRGCVISEDGGMAYSSSSGRSIISTDGFYYKSGSSVVGKDETFISKSKNFFYGTSTTIKAGSAYMNEGAVWVGSQEEDN