Scaffold Ga0334982_0004306

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0004306
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8741
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0004306_1875_2312	F015723	N/A	MPKIISITPTGQWQDLYKLEIRFDTGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYNQSAPSAPSYTAKTDDRSASIIRQVALKSAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHTEHFANRNDPF
Ga0334982_0004306_2500_2856	F009600	N/A	LTYKIVVGKVPSLNAFYASKHWTARVKAKELVSREVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVKSLKLVHDTTILKDTAEITFTGLLVSE
Ga0334982_0004306_327_554	F010908	GAGG	MKQILSPFQKYECFAVDGVDYLVVDYTIIQDKDDNLVEWASEMKFKRLSDHKHYTMPMTKILTNYNEGRAKRCKC
Ga0334982_0004306_3624_3998	F014228	N/A	MWTILLTATLAALSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLELYKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGAAVTLGLILIAAYFIKKWIDKLVE