Basic Information | |
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Taxon OID | 3300033981 Open in IMG/M |
Scaffold ID | Ga0334982_0003916 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9172 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (95.45%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001477 | Metagenome / Metatranscriptome | 687 | Y |
F003212 | Metagenome / Metatranscriptome | 500 | Y |
F018135 | Metagenome | 236 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334982_0003916_3559_3717 | F018135 | AGG | MTVERVRHSGAYVISEIVGEGRRGYLFTQTYFGYTLKQAKAQFKIALEREGK |
Ga0334982_0003916_4153_4305 | F003212 | GGAG | MKDRYLVTLEIETYDGDPKRWNWDNLYIGEENIKIIETQFKGRVLPEERE |
Ga0334982_0003916_4678_4920 | F001477 | AGGAGG | MSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEHAIQWLSLAPRESRILVSAWDSDEEDAHLVGQTIDITEIVRAASL |
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