Scaffold Ga0334982_0003916

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0003916
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9172
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0003916_3559_3717	F018135	AGG	MTVERVRHSGAYVISEIVGEGRRGYLFTQTYFGYTLKQAKAQFKIALEREGK
Ga0334982_0003916_4153_4305	F003212	GGAG	MKDRYLVTLEIETYDGDPKRWNWDNLYIGEENIKIIETQFKGRVLPEERE
Ga0334982_0003916_4678_4920	F001477	AGGAGG	MSNIYTIHPRKSELILLYEVVDESGRAEWGGANAEHAIQWLSLAPRESRILVSAWDSDEEDAHLVGQTIDITEIVRAASL