Scaffold Ga0334982_0003875

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0003875
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9219
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y
F013185	Metagenome	273	Y
F034929	Metagenome	173	N
F035760	Metagenome / Metatranscriptome	171	N
F043398	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0003875_1750_2028	F005027	N/A	MCKDGNATANNKGKTMETSLSELIAKLTNLSHNLALELRFKDSSLVLEAVGALHAIPTLAEKVRDSWHPSLNTSGPSKGLNYLSTVKLANDE
Ga0334982_0003875_2421_2633	F034929	N/A	MGVMLAMAQNDGQQTMIQHWGYVPLRSKDKKTLVQVFIDLDTGLIEYTQVCQRAESWHSWGLPTEVQRFD
Ga0334982_0003875_2668_2991	F004670	GAG	MTYTDLPLFRATDPETSRQISPIRVGTHRALLLEQYYYATLGLTDEEAGARSALAGHEIKGYWKRCSDLRTIGLIQDLGIRRALTSGSQGIVCGITQKGMDMVRGWA
Ga0334982_0003875_3127_3606	F035760	N/A	MKYTGYDKTATAKMAGTEKFVNLCSRRWAFTNLGTLVVREMRSGQGMSVHATARACDIGFKDTKEGRAAAVQAMQWFVKYYKELGIEEVHDYGGLINGTWQGWRCNRNGKPGWKKWTDTNNGGSKNGRWIHVELAPQSNGGHAEDGVALEAAWRALPKP
Ga0334982_0003875_7064_7570	F013185	N/A	MSLETSAEITGLKQALSELSKLDKSARFKAAAKIKASSPAMLEEGRKQFPSEIGVSMIRGWGNKGRLGYNKTAVDKGVQIMVGGRARSGVTPLVTLVQKSAAGAMFSQAGTKNNSQFSDLLANVFGRPQRGLWRSRAFIAEQGTADIMKAVDEVIADANRALQARTSG
Ga0334982_0003875_8495_8857	F043398	AGGTGG	MPATGLLNEAMQDLKATLTAVTGLRVVSDPTKIVPNCVFLDAPSFETVAGGGNIVRVTIPVRVIGSGTAAQNVLENILSIVATVVGSSVVIMAGQPSSLEIGGATYPAYDLQMAMQAQKQ