Scaffold Ga0334982_0003874

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0003874
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9220
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (32.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041151	Metagenome	160	Y
F050358	Metagenome	145	Y
F097241	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0003874_108_419	F041151	N/A	MTTAKDLINQLIELRAEREELEAREDFLKEQLQGAIALGELDSHETDDGIYEFDNAKYIRCQRNSYKHSKDAEKAIRTIKEQDIDAGLAQRNVTVFYQLRITS
Ga0334982_0003874_3565_3768	F097241	AGG	MNFRTAVKSVPSELIFIGYSWETTREHYFQRHANWSKASEIRELRKLYAARLWNECGITVDLEEGFS
Ga0334982_0003874_4470_4649	F050358	N/A	MNTILADLEAAKQQLSDAQTEYLHCFARGDFAACGKAKHAVNKQMKQVQTLIAQKLALR