Scaffold Ga0334982_0002516

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0002516
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11343
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F004115	Metagenome / Metatranscriptome	452	Y
F009683	Metagenome / Metatranscriptome	314	Y
F013317	Metagenome / Metatranscriptome	272	Y
F014016	Metagenome / Metatranscriptome	266	N
F014613	Metagenome / Metatranscriptome	261	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0002516_1483_1869	F000545	N/A	MDAYWFRWALGLSEMIKDAHPFPCSNCKLVTPHIELKRFNTEDVAEAPEEVWLVECQRCFLQRIIYPSDRVASKEDDIVRCEQCGGWKMKSGKCRVCRLAAGFEKISVKYWTGNSTMERPYDEQAPLY
Ga0334982_0002516_1824_2411	F000645	GAG	MSNYLDNYISVQDRLKEFINAHPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKINQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAVADALGAEIIDELPLCSNGCGPMILKQGTKEGKEYRGWVCPVPKSGHPAKWMRIGSDGHWVFQK
Ga0334982_0002516_2395_2679	F004115	GGA	LSLTRNHNSNQYCDYCKYRWGQNKNGWDLRATTPAVWKVQSETPLRKAQVRFYCQPCADDAQNWPDGTFYSLKEQLEDAINDFAGREKLDVQLP
Ga0334982_0002516_2657_3001	F009683	N/A	MKDIREGEQVSDTQKSLNEWLESAGDTLFDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSSPEDWDDIESDSQP
Ga0334982_0002516_2946_3125	F014613	N/A	MGWMQMFPNLSDTQVFAITIGVPFFGLYLWALWSSAKAKAFNEGYKRGRASVRYTEIIK
Ga0334982_0002516_3100_3300	F014016	GGA	MINKVTLIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVDADVS
Ga0334982_0002516_3363_3599	F013317	N/A	LIEKKKWDYLADIRARTGAKTLYINATPQGIYQFDLGALIEPDWVLKSLPVTTDFSNKAHSERLCGFLDIRHAELLLV
Ga0334982_0002516_6373_7620	F001322	GGCGG	MTAWSPVYRVKVNGSTVTNATLSGLTITSGRDDIYQQPLAGYCSLTLIETNGASVPYEINDAVTIEVQDSTGTYVNLFGGFITDLGITVQTSGSTATSQRIQITAVGALARLARAVYVGNFAHQVDGDRIEELLSTVLFDQWNEVPAAETWNGYDATTQWQDAENSGLGEIDTPGDYELHSESNLNDTVYNLASRFANSGLGYLYEDSQGRIGYADSTHRAQYLVSDGYLNLDANDAIGPGLSIVKRAGDVRNAITLSYGSAGNQSVTDSDPSSIEQYGQLAATIQTTLRNQNDAEDQAEFYLTIRAQPQFALRQISFPISSPEIPDAERDDLLNVFMGLALSIDNLPPNMVNGTFLGFVEGWTWTASLNQLNLTMNVSPLEFSLQAFRWTSLPNNLTWNDVSPTLDWQNATIVG