Scaffold Ga0334982_0002382

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0002382
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11680
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011761	Metagenome / Metatranscriptome	287	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0002382_5802_6872	F011761	AGGAG	MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSGSGDGFGPSPLAVEQNPSLGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCQAFLSFKATPNNTNYSPTPADGFARPTQLGAMELITAGLPSNTAGWTNGFTSASVLELVRNVKQNYKVARLPGTPIIVLDSNGDAPTPTTTATAGQDGSSLNRMLAELTGGAVSQSGGSNLSALGNELLSTGRIESVYGCAVIFTTFLSAANRVLLGQQSASPVLVGAYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINILQN
Ga0334982_0002382_6893_7678	F057213	GAG	MTDNNFVGSDTAPEAEQGTNQQVDGKVNAGAIRKSTTSGILNALSQASGQNFESVEAAIGYIARTASQQQVGGSAQPVESEPTTDSRMGRDVGNDSTDLRDQFMKLQRDLAQKERALRQKELDTEILRNMGDRFDQDLQDYALQKIKSNLTFKRDGSYSIVNSKGQERYGMDGNPLNLKSLIDEVAQGNPKLLKQNNLSSGSGLRPGQQSFAGATPDAIPDYSKDPAAFNSWAQKMGLGKRVGLKGAGVTATVSTASRKIV
Ga0334982_0002382_7711_9321	F026558	GGA	MKVQELIHKNPIYNAIYEQMLGYQYAYLGGYIFKTYVRKKRPSEDSNLYLDLVQNTVAQPICRYIVDTINDVLFEPGVKRELIFCTPQGTKINPDNQEWSQLFILDSDLNNRSLDSFMEQVGDLTSIYGHCWIFVDMPKEGDANYGRPYVVSVNPLNVWDWEWEWFGGKPMVKYVKILESEDKDNWYLKCYHLGTEEYPSYWKSYKVGKNVAKGDVEEIGTGTYPAGMAIPGFIVYGRRDPRTIDIGVSDIDAASDAQREHYKLECEAYTSIQFAKTIIRADKGVAIPVHAGSIVRASAGQVECIPVDTGDVDKVTSRQREILEQIEALSGLGGLRNTKNQIASGIAIIEERKTLHRLAKSKARLMEVAEEMIFTFAARFMGVRWAGEVHYNTDYEAHDTNYRLALMGQAKNLVQNNPIIDNLIAKEIIGMLAPAEKIPQYEQAYIDTITDPQVKELMTKDNEQINSRDLGDQITTPEQFGETEAVYGDTTEYDSAGDTLSGYNDEGVGTPVTYTGQSYYTNQAIATQLTGINTGR