Scaffold Ga0334982_0002378

Overview

Basic Information

• Taxon OID: 3300033981
• Scaffold ID: Ga0334982_0002378
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11696
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008183	Metagenome / Metatranscriptome	337	Y
F009393	Metagenome / Metatranscriptome	318	Y
F014133	Metagenome	265	Y
F018367	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334982_0002378_6264_6617	F009393	AGGAG	MSNNSQIAFAPLGETIVVPAAAVAPTGVQALVSGRLDAQGTGQYRIINNSIYTVFLGVGTTAALATANAVAPIAGNPSPAIVLVPGAVEILRFARTSYFSGLASAAATIYIVQGEGI
Ga0334982_0002378_6618_6848	F008183	AGG	MLETDIMAEGNEIDLVKYGVLWQKVQDMDKKMDKVERQLDELMALANKGRGGLWFGMTIVSGISAVVGYLLNYFKH
Ga0334982_0002378_6859_7032	F018367	GAG	VIDVASAQIPWPNTEQKIVLVCRVVLPQEKYGANEFLDKDGRVCRWVLEVVKKDRHD
Ga0334982_0002378_9583_9795	F014133	GAGG	MNHLKNVWAWFTNHWVMPTPAELIAEELIQAQRTKLRHQTAQEYHAAIVAYNVARIKRLEGLTAKQETTE